<?xml version="1.0" encoding="UTF-8"?><rss xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:content="http://purl.org/rss/1.0/modules/content/" xmlns:atom="http://www.w3.org/2005/Atom" version="2.0"><channel><title><![CDATA[RSS Feed]]></title><description><![CDATA[RSS Feed]]></description><link>http://direct.ecency.com</link><image><url>http://direct.ecency.com/logo512.png</url><title>RSS Feed</title><link>http://direct.ecency.com</link></image><generator>RSS for Node</generator><lastBuildDate>Mon, 13 Apr 2026 10:31:19 GMT</lastBuildDate><atom:link href="http://direct.ecency.com/created/lammps/rss.xml" rel="self" type="application/rss+xml"/><item><title><![CDATA[COOKE-DESERNO membrane patch forming cylinder!]]></title><description><![CDATA[This is a simulation I am currently doing. The model is described here:]]></description><link>http://direct.ecency.com/hive-196387/@dexterdev/cooke-deserno-membrane-patch-forming-cylinder</link><guid isPermaLink="true">http://direct.ecency.com/hive-196387/@dexterdev/cooke-deserno-membrane-patch-forming-cylinder</guid><category><![CDATA[hive-196387]]></category><dc:creator><![CDATA[dexterdev]]></dc:creator><pubDate>Tue, 09 Feb 2021 10:21:00 GMT</pubDate><enclosure url="https://images.ecency.com/p/S5Eokt4BcQdk7EHeT1aYjzebg2hC7hkthT45dvfJKFz1UAJBcCJN7eU9QbGnPsZD9dgSJYe?format=match&amp;mode=fit" length="0" type="false"/></item><item><title><![CDATA[Creating a CG vesicle structure and coordinate file for simulations]]></title><description><![CDATA[Hello friends! I am back with my coarse-grained(CG) molecular dynamics(MD) simulation series. Today we will see how to create a vesicle coordinate file and assign it proper topology and structure information.]]></description><link>http://direct.ecency.com/hive-196387/@dexterdev/creating-a-cg-vesicle-structure-and-coordinate-file-for-simulations</link><guid isPermaLink="true">http://direct.ecency.com/hive-196387/@dexterdev/creating-a-cg-vesicle-structure-and-coordinate-file-for-simulations</guid><category><![CDATA[hive-196387]]></category><dc:creator><![CDATA[dexterdev]]></dc:creator><pubDate>Fri, 01 May 2020 16:08:51 GMT</pubDate><enclosure url="https://images.ecency.com/p/2bP4pJr4wVimqCWjYimXJe2cnCgnL5gmsP735dBGPpq?format=match&amp;mode=fit" length="0" type="false"/></item><item><title><![CDATA[Modelling a "water-free" coarse-grained lipid system]]></title><description><![CDATA[In the last article, we saw how to set-up a coarse-grained simulation using LAMMPS software. In today's article, I will discuss how to come up with a model to simulate a coarse-grained lipid system. In]]></description><link>http://direct.ecency.com/hive-196387/@dexterdev/modelling-a-water-fr-1587907199</link><guid isPermaLink="true">http://direct.ecency.com/hive-196387/@dexterdev/modelling-a-water-fr-1587907199</guid><category><![CDATA[hive-196387]]></category><dc:creator><![CDATA[dexterdev]]></dc:creator><pubDate>Sun, 26 Apr 2020 13:20:00 GMT</pubDate><enclosure url="https://images.ecency.com/p/2bP4pJr4wVimqCWjYimXJe2cnCgnLsCPQGfXPD4bfxS?format=match&amp;mode=fit" length="0" type="false"/></item><item><title><![CDATA[Longer run of the LAMMPS code from previous post exhibits bilayer self assembly !]]></title><description><![CDATA[I just wanted to update you guys with a longer run of LAMMPS code in my previous article. In my previous article, it seemed that we were observing micelle like structures. But on running it for a longer]]></description><link>http://direct.ecency.com/steemstem/@dexterdev/longer-run-of-the-la-1586775972</link><guid isPermaLink="true">http://direct.ecency.com/steemstem/@dexterdev/longer-run-of-the-la-1586775972</guid><category><![CDATA[steemstem]]></category><dc:creator><![CDATA[dexterdev]]></dc:creator><pubDate>Mon, 13 Apr 2020 11:06:15 GMT</pubDate><enclosure url="https://images.ecency.com/p/S5Eokt4BcQdk7EHeT1aYjzebg2hC7hkthT45eQpnxGXuo9uSdwroFtmdLZLB4mGfKeDH3Kk?format=match&amp;mode=fit" length="0" type="false"/></item><item><title><![CDATA[A toy example of molecule aggregation to familiarize with LAMMPS software]]></title><description><![CDATA[Hello friends... Welcome to my new molecular dynamics post. As I mentioned in my previous post, I am going to start the new series on coarse-grained lipid models. As an opening article to this series,]]></description><link>http://direct.ecency.com/steemstem/@dexterdev/a-toy-example-of-molecule-aggregation-to-familiarize-with-lammps-software</link><guid isPermaLink="true">http://direct.ecency.com/steemstem/@dexterdev/a-toy-example-of-molecule-aggregation-to-familiarize-with-lammps-software</guid><category><![CDATA[steemstem]]></category><dc:creator><![CDATA[dexterdev]]></dc:creator><pubDate>Mon, 06 Apr 2020 10:45:09 GMT</pubDate><enclosure url="https://images.ecency.com/p/S5Eokt4BcQdk7EHeT1aYjzebg2hC7hkthT45eKDLBakomEy4skqH1Repsq2DvNmwJUr8FUA?format=match&amp;mode=fit" length="0" type="false"/></item><item><title><![CDATA[Coarse-grained lipid membranes: A teaser of upcoming MD simulation stuff!]]></title><description><![CDATA[Hi friends... To be honest I am overwhelmed with many things recently. And few days back my tinkering became official work(Well... Kinda). Few of you might have seen my previous post. So I will elaborate]]></description><link>http://direct.ecency.com/steemstem/@dexterdev/coarse-grained-lipid-1585721239</link><guid isPermaLink="true">http://direct.ecency.com/steemstem/@dexterdev/coarse-grained-lipid-1585721239</guid><category><![CDATA[steemstem]]></category><dc:creator><![CDATA[dexterdev]]></dc:creator><pubDate>Wed, 01 Apr 2020 06:07:21 GMT</pubDate><enclosure url="https://images.ecency.com/p/S5Eokt4BcQdk7EHeT1aYjzebg2hC7hkthT45e4ixpYiUgcHWQmBFFFwp4rnXEh6JTpHzfDG?format=match&amp;mode=fit" length="0" type="false"/></item><item><title><![CDATA[Hello Hive! My first post here: A lipid vesicle simulation video]]></title><description><![CDATA[I am excited these days. Because I got so high in the process of simulating coarse-grained molecular dynamics simulations using a software called LAMMPS. A lot of things are happening right now in this]]></description><link>http://direct.ecency.com/steemstem/@dexterdev/hello-hive-my-first--1585134619</link><guid isPermaLink="true">http://direct.ecency.com/steemstem/@dexterdev/hello-hive-my-first--1585134619</guid><category><![CDATA[steemstem]]></category><dc:creator><![CDATA[dexterdev]]></dc:creator><pubDate>Wed, 25 Mar 2020 11:10:27 GMT</pubDate><enclosure url="https://images.ecency.com/p/S5Eokt4BcQdk7EHeT1aYjzebg2hC7hkthT45eQkJfnjENAKfoP5KsCFU379MPXGSTh5iXLz?format=match&amp;mode=fit" length="0" type="false"/></item></channel></rss>