The Deep State sends some well meaning colonists and a loyal AI named Walter on a mission with a fake objective. Their real objective is to install an upgrade to David. An AI that has gained sentience and can wirelessly hack and "Agent Smith" his replacement body as soon as Walter gets in range. Notice how he teaches Walter to play the flute. Their big fight is simply David proving to himself the new body is worthy of being the "upgrade". David's consciousness has already downloaded in to Walter the moment he was in signal range. David is doing genetic experiments to create a slave army because instead of searching for the globalists immortality he has decided humans should serve him instead.
Things to notice
The random pyramid in space out the spaceship window.
The moment Walter's eye lights up.
The lights on that space suit.
Every time you speak their name their image burns away.